main.md contain sub-mds:
1. [1 - ](1.md) 1. [2 - ](2.md) 1. [3 - ](3.md) 1. [4 - ](4.md) 1. [5 - ](5.md) 1. [6 - ](6.md)
I use calibre command:
ebook-convert main.md main.epub
But only the content of main.md is wrote to epub.
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I just use Pandoc and specify all .md files on the command line. Here is an incomplete command line:
pandoc [some options] 1.md 2.md 3.md.
Source files go last, after all other options, on the command line.